The series has 48 episodes, most of which have two stories bringing the total number of segments to 96. Three of the episodes (1, 26 and 48) which open the series and conclude the two seasons (the first having 26 episodes, the second having 12) are one story divided into two parts.
- 1a Krypto's Scrypto part 1
- 1b Krypto's Scrypto part 2
- 2a Super-Flea
- 2b A Bug's Strife
- 3a Meet the Dog Stars
- 3b The Streaky Story
- 4a Diaper Madness
- 4b Feline Fatale
- 5a Dog-Gone Kevin
- 5b The Dark Hound Strikes!
- 6a My Pet Boy
- 6b Dem Bones
- 7a Bat Hound for a Day
- 7b Dogbot
- 8a Old Dog, New Tricks
- 8b Talk to the Animals
- 9a My Uncle, the Superhero
- 9b Top Dog
- 10a Puss in Space Boots
- 10b Teeny Tiny Trouble
- 11a Dogbot to the Rescue
- 11b Bad Bailey
- 12a Bat Hound's Bad Luck
- 12b Circus of the Dog Stars
- 13a The Living End
- 13b The Dog Days of Winter
- 14a Bad Hair Day
- 14b The Cat and the Bat
- 15a Melanie's Monkey
- 15b Funny Business
- 16a Now You See Him...
- 16b Bones of Contention
- 17a Superdog? Who's Superdog?
- 17b The Good Life
- 18a Streaky's Supercat Tale
- 18b The New Recruit
- 19a Up, up and Away
- 19b Dinosaur Time
- 20a Puppy Problems
- 20b Switching Sides
- 21a Leaf of Absence
- 21b Big Sister
- 22a Bat Hound Meets the Dog Stars
- 22b A Dog's Life
- 23a Stray for a Day
- 23b Ruffled Feathers
- 24a Bat Hound and The Robin
- 24b Furry Fish
- 25a Tusky's Tooth
- 25b When Penguins Fly
- 26a Storybook Holiday part 1
- 26b Storybook Holiday part 2 (season 1 end)
- 27a Kid's in Capes (season 2 begin)
- 27b Attack of the Virtual Vegetables
- 28a Mechani-Bot
- 28b Stretch-O-Mutt to the Rescue
- 29a Growing Pains
- 29b K-9 Crusader
- 30a Andrea Finds Out
- 30b Magic Mutts
- 40a Reptile Round-Up
- 40b Streaky's Field Trip
- 41a Pied Pussycat Piper
- 41b Solar Specs
- 42a Too Many Cooks!
- 42a Join the Club
- 43a Bailey's Back
- 43b Streaky's Inner Struggle
- 44a Face Time
- 44b Catopia
- 45a The Parrot and the Pirates
- 45b Robbie's Return
- 46a Revolt of the Beavers
- 46b Invasion From the Planet Peanut
- 47a Mechanikalamity
- 47b Barrumpbarrump
- 48a Iguanukkah part 1
- 48b Iguanukkah part 2